Assessing the genetic differentiation of Holstein cattle herds in the Leningrad region using Fst statistics


  • Michael Grigorievich Smaragdov Russian Research Institute of Farm Animal Genetics and Breeding - Branch of the l.K. Ernst Federal Science Center for Animal Husbandry
  • Andrei Andreivich Kudinov Russian Research Institute of Farm Animals Genetics and Breeding, Saint-Petersburg, Russia
  • Pekka Uimari University of Helsinki, Finland


Wright’s Fst, dairy cattle, herds, genetic diversity


Holstein bulls and semen have been imported to Russia from Western countries since the 1970s. The objective of our study was to examine the effect of this introgression on genetic diversity between various commercial Holstein herds in the Leningrad region. A total of 803 Holstein cows from 13 herds were genotyped using the Illumina BovineSNP50 v.2 array. The pairwise Hudson’s estimator of Fst values between 13 herds varied from 0.002 to 0.015, which is less than values usually obtained between dairy cattle breeds (> 0.1). The mean of these pairwise Fst values revealed differences between herds depending, mainly, on the proportion of common sires shared between the herds. In addition, we investigated the cause of negative Fst values. Based on our results, these negative values could be interpreted as an excess of within-herd genetic diversity over the between-herds genetic diversity. Our results show that introgressions of Holstein genes into Russian Black and White cattle of the Leningrad region have created genetic separation between herds similar with those for Jersey cows in USA, Australia and New Zealand.


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How to Cite

Smaragdov, M. G., Kudinov, A. A., & Uimari, P. (2018). Assessing the genetic differentiation of Holstein cattle herds in the Leningrad region using Fst statistics. Agricultural and Food Science, 27(2), 96–101.
Received 2018-03-01
Accepted 2018-05-28
Published 2018-06-27